rs33818016 SNP Detail

Summary

• ID
  rs33818016
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47922363 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCGGGACCT ATAGCAGGAG CCCCCAAATT CTCAGGTAAT
  CTCATTAGAA AGGTGGATGT CCAAGTCACC CTTTTCCAGA ATTCATGAAA GTAGCCTAGG
  R
  CGTCCTGTCA ACCCGTTGGA CGCCTTGGGG GCGGAGCCGA GTCGATGACG TTCTAGAAAT
  GTCACCACTG GGTACCAGAG ATGGCGCTCC CTGTGGGCGT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss48365523	NES12221801	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33818016					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48365523	NES12221801	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47922363 () rs orientation: forward

Symbol	Name	Function Class
Bysl	bystin-like	within coordinates
Cpgi9265	CpG island 9265	within coordinates
Gm20517	predicted gene 20517	151 bp upstream
Med20	mediator complex subunit 20	147 bp upstream
Rr331712	regulatory region 331712	1363 bp distal
Rr339937	regulatory region 339937	within coordinates
Rr405326	regulatory region 405326	within coordinates
Tssr5145	transcription start site region 5145	187 bp upstream
Tssr144986	transcription start site region 144986	119 bp upstream
Tssr144987	transcription start site region 144987	132 bp upstream
Tssr144988	transcription start site region 144988	185 bp upstream
Tssr148446	transcription start site region 148446	260 bp upstream
Tssr148447	transcription start site region 148447	194 bp upstream
Tssr148448	transcription start site region 148448	4 bp upstream
Tssr148449	transcription start site region 148449	11 bp downstream