rs33818018 SNP Detail

Summary

• ID
  rs33818018
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47922102 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTGTTGT CTGGCTTGCT
  GCAAAATCCG TCTGCTTAGC CGGGGTCCCA CATACTCTTC CTCCTCTTCG ACCTCACGCC
  CCCGCCGTTT TTCTCGGGTC CCCGCGCGCA CTGCGTTCCC AGCCAGGATC TGCTCGGCCA
  GAGGTGCATG CTTCTCCCGA TTGCTGGCCC CACGTGTCAC CTTGAATTTG GGCATTTTGG
  Y
  CGAAAAAATT GCCCACCAGG TTCACACGTG TGAAGCCGGC TAAAAAGCCG ATACTGCGCT
  TGCGCTGTGT GTTCCGATCG CCAAGAGGCC ACTGAGAGAT CACAGTGCCC CCCAGCGTTA
  GGAGGCCGGA AGTTCCTCAT CTATTACTCT CAGGAAGAGC TTCGGGACCT ATAGCAGGAG
  CCCCCAAATT CTCAGGTAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss48365525	NES12221796	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33818018					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48365525	NES12221796	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47922102 () rs orientation: forward

Symbol	Name	Function Class
Bysl	bystin-like	within coordinates
Cpgi9265	CpG island 9265	within coordinates
Gm20517	predicted gene 20517	412 bp upstream
Med20	mediator complex subunit 20	408 bp upstream
Rr331712	regulatory region 331712	1102 bp distal
Rr339937	regulatory region 339937	within coordinates
Rr405326	regulatory region 405326	192 bp upstream
Tssr5145	transcription start site region 5145	69 bp downstream
Tssr144986	transcription start site region 144986	380 bp upstream
Tssr144987	transcription start site region 144987	393 bp upstream
Tssr144988	transcription start site region 144988	446 bp upstream
Tssr148446	transcription start site region 148446	within coordinates
Tssr148447	transcription start site region 148447	34 bp downstream
Tssr148448	transcription start site region 148448	246 bp downstream
Tssr148449	transcription start site region 148449	272 bp downstream