rs33818019 SNP Detail

Summary

• ID
  rs33818019
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47921211 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCAACTGG GAGGTGAACA
  ACAATTCCTC CCCAGTGAGA CAGGTGGCAG TACCCACCCC TCTTCCCCCT TTTAGCCCGT
  AAACAATACT GTTTCCCCTC CCCTGTCGCT GGGACAGGGA CAGTCCCCAC TTGCTTTTCA
  GGTCTTATTC GAAGGACATG AAATCTGGGA TACCCACCAT GTAGAATTAA TGTTCATCTG
  Y
  TTTTTTGTTT AAATAGAAAT ATCATCACTT TTTTCCTCTC TCTTGAGAGA CAGGGCTCGT
  TAATCTGAAA TTTACTATAT AGCCAAGAAG GTCTTCTGCC TTGCTTCTCG AGTGCTGGGA
  TTACAGGTGA GCCTCGCCAC TCCTGCTTGG AATATGTAAC TCTATTTAAT GGGTGCCTTG
  AGCTAGACTT CCGGTGTTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48365526	NES12221833	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33818019					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48365526	NES12221833	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47921211 () rs orientation: forward

Symbol	Name	Function Class
Bysl	bystin-like	within coordinates
Cpgi9265	CpG island 9265	514 bp proximal
Gm20517	predicted gene 20517	1303 bp upstream
Med20	mediator complex subunit 20	1299 bp upstream
Rr331712	regulatory region 331712	211 bp distal
Rr339937	regulatory region 339937	within coordinates
Rr405326	regulatory region 405326	1083 bp upstream
Tssr5145	transcription start site region 5145	960 bp downstream
Tssr144986	transcription start site region 144986	1271 bp upstream
Tssr144987	transcription start site region 144987	1284 bp upstream
Tssr144988	transcription start site region 144988	1337 bp upstream
Tssr148446	transcription start site region 148446	888 bp downstream
Tssr148447	transcription start site region 148447	925 bp downstream
Tssr148448	transcription start site region 148448	1137 bp downstream
Tssr148449	transcription start site region 148449	1163 bp downstream