rs33818020 SNP Detail

Summary

• ID
  rs33818020
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47920958 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTCAGAGT TAAAAAAAAA
  AAGTTATTTT AAGGGCAGGT GTGGTGTCAC CCACCTATCA TGCCACCACA TGGAAAACAG
  AGGCAAGATC AGGAGTTCAA GGTCAGCCTC CCCTACAGCA TTAGATGCCA TCCCAGGCTC
  CATGAGCCCT TACTTTAAAA AAAACTAAAA GAAACAGAAA AAGCTGCTGT AGGCCCAAAA
  Y
  CATGTTCAAA TGTGTCAATA TTGCTTTTTA GGAGAAATAA GAATGGAAGA TTAAGCAACT
  GGGAGGTGAA CAACAATTCC TCCCCAGTGA GACAGGTGGC AGTACCCACC CCTCTTCCCC
  CTTTTAGCCC GTAAACAATA CTGTTTCCCC TCCCCTGTCG CTGGGACAGG GACAGTCCCC
  ACTTGCTTTT CAGGTCTTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48365527	NES12221832	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33818020					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48365527	NES12221832	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47920958 () rs orientation: forward

Symbol	Name	Function Class
Bysl	bystin-like	within coordinates
Cpgi9265	CpG island 9265	767 bp proximal
Gm20517	predicted gene 20517	1556 bp upstream
Med20	mediator complex subunit 20	1552 bp upstream
Rr331712	regulatory region 331712	within coordinates
Rr339937	regulatory region 339937	within coordinates
Rr405326	regulatory region 405326	1336 bp upstream
Tssr5145	transcription start site region 5145	1213 bp downstream
Tssr144986	transcription start site region 144986	1524 bp upstream
Tssr144987	transcription start site region 144987	1537 bp upstream
Tssr144988	transcription start site region 144988	1590 bp upstream
Tssr148446	transcription start site region 148446	1141 bp downstream
Tssr148447	transcription start site region 148447	1178 bp downstream
Tssr148448	transcription start site region 148448	1390 bp downstream
Tssr148449	transcription start site region 148449	1416 bp downstream