rs33818079 SNP Detail

Summary

• ID
  rs33818079
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:47819207 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGAACCCT GGGCACGCCC
  CTTTCCCTCC GCCCTCACTT GTAGAGCAAG AACAGCCTGT ACCCTTGAGA AACCACAAGA
  GGAAGTTTAG GGCGGATTGT GGGTGGGGAA AGTTCTGGGA CCTCTGCCAA GTTTCCCTTT
  CCCTGCTGAA CGGTAGGTGT GTTTATTTTG CCCACAGACT TTTAAAGTTT AAATCCTCTG
  M
  GTTTCAAAGA GCTGTCAATT CCTGTCCTTG TCCCTGTCCC TGCTGCCGAC CTAGGGCACC
  TTTCCTGCAG TAAGACTGGA GTCTGTGTCT TCTCTGGTCT CAGCCCCTCA CTTTCTCCCT
  AAAGCACCCC TAAAAACCTT TGAACTCTGG GTCATGTGGC TTCAACAACC ACTTAGGGGC
  TCCGTAGTGT TTCTCACCGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48365719	NES12227397	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33818079					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48365719	NES12227397	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47819207 () rs orientation: forward

Symbol	Name	Function Class
Ccnd3	cyclin D3	Intron
Rr370267	regulatory region 370267	17 bp downstream
Rr528025	regulatory region 528025	within coordinates
Rr528026	regulatory region 528026	806 bp proximal
Tssr5140	transcription start site region 5140	1194 bp upstream
Tssr144927	transcription start site region 144927	5 bp upstream
Tssr144928	transcription start site region 144928	911 bp upstream
Tssr144929	transcription start site region 144929	1060 bp upstream
Tssr144930	transcription start site region 144930	1138 bp upstream
Tssr144931	transcription start site region 144931	1166 bp upstream
Tssr144932	transcription start site region 144932	1235 bp upstream
Tssr144933	transcription start site region 144933	1281 bp upstream
Tssr144934	transcription start site region 144934	1347 bp upstream
Tssr148442	transcription start site region 148442	276 bp upstream
Tssr148443	transcription start site region 148443	1218 bp downstream