rs33818082 SNP Detail

Summary

• ID
  rs33818082
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47818480 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGTGTCAC TTCATGAAAA
  GCAGCACCCT TGGATCTACT CCCTGCAAGT TGGAGACAGT GTCTGTGAGG GATGTGAGCC
  CCTCTACAGG GCAGCCTTCC TGAAGTCTAG TTGTTTTCTC TGCCTCCTCT CCGAAACTCT
  TGGTTTCTCC GAGGACCTCT CTGCATAGAT TTGGAGATGC CCAGGGCAGG TCTCTATGTC
  Y
  GCTATGATCA CGACTCAATT TGCAATCCCA GTACTCAGGA GGTAGAGACA GGCCAGGCCA
  GTGTCTGTGA GTTGAGTTTG AGGGCAGCCT GGTCTACATA AGTGAGACCT GCACTAGAAA
  GACCAACTTA CAGGGCTGGA GAGGTGGCTC AGAGGTTAAG GGCATTGGCC GAGATACTAG
  AGGACCTGGG TTCAATTCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48365722	NES12227460	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33818082					SNP	T	T	T	T	T	T	T	T	T	T	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48365722	NES12227460	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47818480 () rs orientation: forward

Symbol	Name	Function Class
Ccnd3	cyclin D3	within coordinates
Rr370267	regulatory region 370267	409 bp upstream
Rr528024	regulatory region 528024	1654 bp distal
Rr528025	regulatory region 528025	within coordinates
Rr528026	regulatory region 528026	1533 bp proximal
Tssr5140	transcription start site region 5140	1921 bp upstream
Tssr144927	transcription start site region 144927	732 bp upstream
Tssr144928	transcription start site region 144928	1638 bp upstream
Tssr144929	transcription start site region 144929	1787 bp upstream
Tssr144930	transcription start site region 144930	1865 bp upstream
Tssr144931	transcription start site region 144931	1893 bp upstream
Tssr144932	transcription start site region 144932	1962 bp upstream
Tssr148442	transcription start site region 148442	431 bp downstream
Tssr148443	transcription start site region 148443	1945 bp downstream