rs33818083 SNP Detail

Summary

• ID
  rs33818083
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47818389 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATGTCTCA CGAAGAACAG
  TGGACCTTGG AATCTGATTA AGAAGATGAT ATAGAAATGG GAGGAGCTTA AGGTGCTCTC
  CCCTCGAATC TCCCGTGTCA CTTCATGAAA AGCAGCACCC TTGGATCTAC TCCCTGCAAG
  TTGGAGACAG TGTCTGTGAG GGATGTGAGC CCCTCTACAG GGCAGCCTTC CTGAAGTCTA
  S
  TTGTTTTCTC TGCCTCCTCT CCGAAACTCT TGGTTTCTCC GAGGACCTCT CTGCATAGAT
  TTGGAGATGC CCAGGGCAGG TCTCTATGTC TGCTATGATC ACGACTCAAT TTGCAATCCC
  AGTACTCAGG AGGTAGAGAC AGGCCAGGCC AGTGTCTGTG AGTTGAGTTT GAGGGCAGCC
  TGGTCTACAT AAGTGAGACC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48365723	NES12227459	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33818083					SNP	G	G	G	G	G	G	G	G	G	G	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48365723	NES12227459	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47818389 () rs orientation: forward

Symbol	Name	Function Class
Ccnd3	cyclin D3	within coordinates
Rr370267	regulatory region 370267	500 bp upstream
Rr528024	regulatory region 528024	1563 bp distal
Rr528025	regulatory region 528025	within coordinates
Rr528026	regulatory region 528026	1624 bp proximal
Tssr144927	transcription start site region 144927	823 bp upstream
Tssr144928	transcription start site region 144928	1729 bp upstream
Tssr144929	transcription start site region 144929	1878 bp upstream
Tssr144930	transcription start site region 144930	1956 bp upstream
Tssr144931	transcription start site region 144931	1984 bp upstream
Tssr148442	transcription start site region 148442	522 bp downstream