rs33818149 SNP Detail

Summary

• ID
  rs33818149
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47869219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATCCATCA TCCTTCCTTC
  CATTCATTTG CCCATCCATC CATTCATCCA CCCACTCATC CATCCATCCA TCCATCCATC
  CATCCTTTTA GACTGAACCA GGAGCCTCTT GAATGCTGAG AATGTTTTCA GACAAGATTG
  TTTATGTTCA GAGTATTATG GCCACAGACA AGTGCTGTCT TCTGTCATCC TAGGCCTCAT
  R
  GATGCTTTAA TTATTCAGTC AAAATATATA GATCATTAGG GCTGGAGAGA TTGTTCGGTG
  AACTTCTAGA GGACCCTACT TCTCTTCCCA GCACCTATGT TCAACTCCAG GGGATCCGAC
  ACCTCTGGCC TCTGAGAGAA CCTGCATCAC GTGTGCATGC CATCACACAG ACATGCATGT
  AAACATAATT AAAAATAACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48365619	NES12224643	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33818149					SNP	A	A	A	A	A	A	A	A	A	A	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48365619	NES12224643	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47869219 () rs orientation: forward

Symbol	Name	Function Class
Ccnd3	cyclin D3	within coordinates
Rr335193	regulatory region 335193	419 bp distal
Rr341904	regulatory region 341904	783 bp proximal
Tssr144956	transcription start site region 144956	769 bp downstream
Tssr144957	transcription start site region 144957	674 bp downstream
Tssr144958	transcription start site region 144958	585 bp downstream
Tssr144959	transcription start site region 144959	568 bp downstream
Tssr144960	transcription start site region 144960	468 bp downstream
Tssr144961	transcription start site region 144961	455 bp downstream
Tssr144962	transcription start site region 144962	429 bp downstream
Tssr144963	transcription start site region 144963	368 bp downstream
Tssr144964	transcription start site region 144964	111 bp upstream