rs33818153 SNP Detail

Summary

• ID
  rs33818153
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47868619 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCCTGTAG CTGAGAAAGC
  AGGCAGGGGA TAGAACTGCC CACCCACCTC TCACCTCGCT CAGATTGTAC AGCTGCTAAA
  AAACAACAGA ACCAGAATTG AAACTGGGCG GGGGCTGGAG GTAAAGGACT TGCCTTGTGT
  ATGTGTGAGA CCCTGGCTTC CATTCCCAGC ACTGTAAACA AAACAAAGCA AGACCGATAA
  R
  CCAGGCAGGG AGTCTGACTA TGGAAGGAGA TACTGTTATT GTTCTGAAGC AGAGAGACAC
  CCAACAAGGC CACACAGCTG ATACCTCAGA CATCTGGGGA TCACACCAAG CTCAAGTCCA
  GAACTCACAT TAGTAACCAC GACTCTGTTC TGTGTCCATG GTAATTCTAA TTATCATCCA
  TTCACCCATC CATCCTTCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48365623	NES12224661	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33818153					SNP	A	A	A	A	A	A	A	A	A	A	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48365623	NES12224661	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47868619 () rs orientation: forward

Symbol	Name	Function Class
Ccnd3	cyclin D3	within coordinates
Rr335192	regulatory region 335192	1619 bp distal
Rr335193	regulatory region 335193	within coordinates
Rr341904	regulatory region 341904	1383 bp proximal
Tssr144956	transcription start site region 144956	169 bp downstream
Tssr144957	transcription start site region 144957	74 bp downstream
Tssr144958	transcription start site region 144958	6 bp upstream
Tssr144959	transcription start site region 144959	23 bp upstream
Tssr144960	transcription start site region 144960	93 bp upstream
Tssr144961	transcription start site region 144961	134 bp upstream
Tssr144962	transcription start site region 144962	152 bp upstream
Tssr144963	transcription start site region 144963	213 bp upstream
Tssr144964	transcription start site region 144964	711 bp upstream