rs33818666 SNP Detail

Summary

• ID
  rs33818666
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142133030 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGCTGAGT ACTCATTTCT
  GGCTCCTAGT GATCCTTCAT TTTTACTCTG TGAAAAGCCC TGGTCATTGC TGTGGGTGGA
  CCCTAAGTTA TGATACTGAC GGACACCTCC AATTTGGTCA TAAATAGACC CCAGCCTCTA
  TTATCTTGGC GCTGTAATGT GTGTCTGTGC TGTCACCTTG TGGTGGTTGT GGCTATCTCT
  R
  CGCTCTTAAA CAAATGATCC TTTTCAGAGA TCGGTATATA AGATGGAAAA GAATGACCCC
  ATCTTCTAAT GAGCCTCAAG AACCCTGGCA GCATCAGCAG ACTAAAGGCC GAGGGTTGGC
  CATCACATGT AAGCTATTCA CTGGTGTGGT GGCAGTTGGT CTCTGTCTCC CATCACCCCC
  CACATCACCC TTGCTATACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47351169	NES11525472	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33818666					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47351169	NES11525472	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142133030 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19965	CpG island 19965	1019 bp proximal
Gm56421	predicted gene, 56421	1375 bp downstream
H19	H19, imprinted maternally expressed transcript	1147 bp upstream
Rr27	regulatory region 27	855 bp proximal
Rr370601	regulatory region 370601	955 bp upstream
Rr658231	regulatory region 658231	658 bp distal
Rr658232	regulatory region 658232	13 bp distal
Rr658233	regulatory region 658233	577 bp proximal
Rr658234	regulatory region 658234	917 bp proximal
Rr658235	regulatory region 658235	1013 bp proximal
Tssr2461	transcription start site region 2461	1367 bp downstream
Tssr70218	transcription start site region 70218	1886 bp downstream
Tssr70219	transcription start site region 70219	1848 bp downstream
Tssr70220	transcription start site region 70220	1736 bp downstream
Tssr70221	transcription start site region 70221	1697 bp downstream
Tssr70222	transcription start site region 70222	1639 bp downstream
Tssr70223	transcription start site region 70223	1497 bp downstream
Tssr70224	transcription start site region 70224	1452 bp downstream
Tssr70225	transcription start site region 70225	1414 bp downstream
Tssr70226	transcription start site region 70226	1319 bp downstream
Tssr70227	transcription start site region 70227	1237 bp downstream
Tssr70228	transcription start site region 70228	1224 bp downstream
Tssr75829	transcription start site region 75829	1915 bp upstream
Tssr75830	transcription start site region 75830	1888 bp upstream
Tssr75831	transcription start site region 75831	1867 bp upstream
Tssr75832	transcription start site region 75832	1801 bp upstream
Tssr75833	transcription start site region 75833	1724 bp upstream
Tssr75834	transcription start site region 75834	1450 bp upstream
Tssr75835	transcription start site region 75835	1418 bp upstream
Tssr75836	transcription start site region 75836	1396 bp upstream
Tssr75837	transcription start site region 75837	1373 bp upstream
Tssr75838	transcription start site region 75838	1303 bp upstream
Tssr75839	transcription start site region 75839	1281 bp upstream
Tssr75840	transcription start site region 75840	1252 bp upstream
Tssr75841	transcription start site region 75841	1225 bp upstream
Tssr75842	transcription start site region 75842	1208 bp upstream
Tssr75843	transcription start site region 75843	1202 bp upstream
Tssr75844	transcription start site region 75844	1172 bp upstream
Tssr75845	transcription start site region 75845	1139 bp upstream