rs33818690 SNP Detail

Summary

• ID
  rs33818690
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:177149212 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATTTCATT TCTGTAATCA
  TGTATGAACT TGTGCTGGCC CTCAGTATAC TCAGCATAGT TTTCTAGCAT CCCCTTCAAC
  GTCTACACGG GCTTTCTGGA TTTTTGAATG CAGCTTCATC CTGACCTGTA CTCTTCGTTT
  ATGCTCAGGT ACATGGGCTA CCTCAGGCAT TTTCCAGGAC CCTGAGGCCA ATCAACAGAC
  Y
  TCTTGAGAGC AACCTCCTTT CATCCACAGA AATGAAAACA GGGCTATGGC AGACAGCTCA
  TGACTTTGTT GTTTTATTGA GACAGGGTCT CTCTCTCCAG CTGACCTAGA ACTCCCAATT
  CTCCTGCCTC AGCTTCCCTG GTGCAGAGAT TTAGACTTGT GCCACCATGC TGAGCTTGAT
  TTGTTTTTGA AAGCTCAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49537902	NES12810690	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T		T	T	T	C		C
ss320158851	CHEV_1_179251777	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33818690					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49537902	NES12810690	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:177149212 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1079	CpG island 1079	1082 bp proximal
Gm36904	predicted gene, 36904	within coordinates
Rr423981	regulatory region 423981	605 bp proximal
Rr423982	regulatory region 423982	1106 bp proximal