rs33818925 SNP Detail

Summary

• ID
  rs33818925
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:47818009 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACTTTTAC ATGGCTGCCT
  GAGATCTTAA CATGCACACC AACTCCTTCT CCACGAGCCA CGGCCTGAGT TCCATTTGTC
  CTTTGAGTCT TGTAACCCAG GTTGGCCTGA AACTATGTGG GTGAGCTGAC TTTGAATGTC
  TGGTCTCTCT GAAGAGTGCC AGGGTTAAAG GCATGTGCTA CCTACCACAC CTGCTTTGTC
  W
  TAGGCACATT CAGACTCTCT CGGGGCTGGT GAGATGGCTC AGTGGGTAAG AGCACCCGAC
  TGCTCTTCCA AAGGTCTGGA GTTCAAATCC CAGCAACCAC ATGGTGGCTC AAAACCATCT
  GTAATGAGAT CTGACTCCCT CTTCTGGAGT GTCTGCAGAC AGACTTAGAC TCTCTCATCC
  TATGTCTCAC GAAGAACAGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48365725	NES12227495	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33818925					SNP	A	A	A	A	A	A	T	A	A	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48365725	NES12227495	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47818009 () rs orientation: forward

Symbol	Name	Function Class
Ccnd3	cyclin D3	Intron
Cpgi9262	CpG island 9262	1739 bp distal
Rr370266	regulatory region 370266	1936 bp downstream
Rr370267	regulatory region 370267	880 bp upstream
Rr528023	regulatory region 528023	1925 bp distal
Rr528024	regulatory region 528024	1183 bp distal
Rr528025	regulatory region 528025	within coordinates
Tssr144920	transcription start site region 144920	2000 bp downstream
Tssr144921	transcription start site region 144921	1979 bp downstream
Tssr144922	transcription start site region 144922	1952 bp downstream
Tssr144923	transcription start site region 144923	1920 bp downstream
Tssr144924	transcription start site region 144924	1902 bp downstream
Tssr144925	transcription start site region 144925	1879 bp downstream
Tssr144926	transcription start site region 144926	1856 bp downstream
Tssr144927	transcription start site region 144927	1203 bp upstream
Tssr148442	transcription start site region 148442	902 bp downstream