rs33818926 SNP Detail

Summary

• ID
  rs33818926
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47817948 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGTATCC ACCTGTCTCC
  CTCCCTGTCC AACCTCACTG TGCTTGGATT ACTAACATTG GCCACTTTTA CATGGCTGCC
  TGAGATCTTA ACATGCACAC CAACTCCTTC TCCACGAGCC ACGGCCTGAG TTCCATTTGT
  CCTTTGAGTC TTGTAACCCA GGTTGGCCTG AAACTATGTG GGTGAGCTGA CTTTGAATGT
  Y
  TGGTCTCTCT GAAGAGTGCC AGGGTTAAAG GCATGTGCTA CCTACCACAC CTGCTTTGTC
  ATAGGCACAT TCAGACTCTC TCGGGGCTGG TGAGATGGCT CAGTGGGTAA GAGCACCCGA
  CTGCTCTTCC AAAGGTCTGG AGTTCAAATC CCAGCAACCA CATGGTGGCT CAAAACCATC
  TGTAATGAGA TCTGACTCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48365726	NES12227494	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33818926					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48365726	NES12227494	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47817948 () rs orientation: forward

Symbol	Name	Function Class
Ccnd3	cyclin D3	within coordinates
Cpgi9262	CpG island 9262	1678 bp distal
Rr370266	regulatory region 370266	1875 bp downstream
Rr370267	regulatory region 370267	941 bp upstream
Rr528023	regulatory region 528023	1864 bp distal
Rr528024	regulatory region 528024	1122 bp distal
Rr528025	regulatory region 528025	within coordinates
Tssr144919	transcription start site region 144919	1957 bp downstream
Tssr144920	transcription start site region 144920	1939 bp downstream
Tssr144921	transcription start site region 144921	1918 bp downstream
Tssr144922	transcription start site region 144922	1891 bp downstream
Tssr144923	transcription start site region 144923	1859 bp downstream
Tssr144924	transcription start site region 144924	1841 bp downstream
Tssr144925	transcription start site region 144925	1818 bp downstream
Tssr144926	transcription start site region 144926	1795 bp downstream
Tssr144927	transcription start site region 144927	1264 bp upstream
Tssr148442	transcription start site region 148442	963 bp downstream