rs33818927 SNP Detail

Summary

• ID
  rs33818927
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47817510 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAGATCAG AGTTTCTAGC
  TACAGAGACT TGAGATGGGA AGTGTCTCTG ATCATTCCGT CACGGCATCA GTCTGTGCTC
  AATCCTTGAA CCCGTGGTCA TGGCTCCCAC GGTTGTGTTT CTATTGCTCA AGGACTTGGG
  GTCCTAGCAG AAAGTTACAC AGCACCGTTG AGTGTAAGTG GGTTAGACGT AGCGTTTCAC
  Y
  GTCTGTCTTT AATAGCTGTA TTAGATCATC TAGTAGGAGC TCGATTTTAC AGATGAGGAA
  ACTTGGGCAC AGGAGGTAAA GAGATCTCTA TAAAGAGGGA ACAAGAAAGG AGTGTCAGGG
  AATTAGAGAG ATGGCTCAAC AGTTAAGGGC ACTTACTACG ACTGCAGGAG ACCCAGGTTC
  GGTTCTCAGC ATGCACATGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48365727	NES12227581	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33818927					SNP	T	T	T	T	T	T	T	T	T	T	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48365727	NES12227581	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47817510 () rs orientation: forward

Symbol	Name	Function Class
Ccnd3	cyclin D3	within coordinates
Cpgi9262	CpG island 9262	1240 bp distal
Rr370265	regulatory region 370265	1904 bp downstream
Rr370266	regulatory region 370266	1437 bp downstream
Rr370267	regulatory region 370267	1379 bp upstream
Rr528023	regulatory region 528023	1426 bp distal
Rr528024	regulatory region 528024	684 bp distal
Rr528025	regulatory region 528025	437 bp proximal
Tssr144917	transcription start site region 144917	1741 bp downstream
Tssr144918	transcription start site region 144918	1625 bp downstream
Tssr144919	transcription start site region 144919	1519 bp downstream
Tssr144920	transcription start site region 144920	1501 bp downstream
Tssr144921	transcription start site region 144921	1480 bp downstream
Tssr144922	transcription start site region 144922	1453 bp downstream
Tssr144923	transcription start site region 144923	1421 bp downstream
Tssr144924	transcription start site region 144924	1403 bp downstream
Tssr144925	transcription start site region 144925	1380 bp downstream
Tssr144926	transcription start site region 144926	1357 bp downstream
Tssr144927	transcription start site region 144927	1702 bp upstream
Tssr148442	transcription start site region 148442	1401 bp downstream