rs33818928 SNP Detail

Summary

• ID
  rs33818928
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47817372 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTGTCACC ACAGTGTCCT
  CTGGGACTAG TCCCCCATAT AGAAGTGGTT CTGCTGCTGC TGCCTGGCAC TGCCTAGCAC
  AGCAGGCTAC CAACTCATTG GACCCTTTTC CCTCTGCCAG TGTTGGGGAC ATTGTGGAAT
  GAGATCAGAG TTTCTAGCTA CAGAGACTTG AGATGGGAAG TGTCTCTGAT CATTCCGTCA
  S
  GGCATCAGTC TGTGCTCAAT CCTTGAACCC GTGGTCATGG CTCCCACGGT TGTGTTTCTA
  TTGCTCAAGG ACTTGGGGTC CTAGCAGAAA GTTACACAGC ACCGTTGAGT GTAAGTGGGT
  TAGACGTAGC GTTTCACTGT CTGTCTTTAA TAGCTGTATT AGATCATCTA GTAGGAGCTC
  GATTTTACAG ATGAGGAAAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48365728	NES12227578	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33818928					SNP	C	C	C	C	C	C	G	C	C	C	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48365728	NES12227578	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47817372 () rs orientation: forward

Symbol	Name	Function Class
Ccnd3	cyclin D3	within coordinates
Cpgi9262	CpG island 9262	1102 bp distal
Rr370265	regulatory region 370265	1766 bp downstream
Rr370266	regulatory region 370266	1299 bp downstream
Rr370267	regulatory region 370267	1517 bp upstream
Rr528023	regulatory region 528023	1288 bp distal
Rr528024	regulatory region 528024	546 bp distal
Rr528025	regulatory region 528025	575 bp proximal
Tssr144917	transcription start site region 144917	1603 bp downstream
Tssr144918	transcription start site region 144918	1487 bp downstream
Tssr144919	transcription start site region 144919	1381 bp downstream
Tssr144920	transcription start site region 144920	1363 bp downstream
Tssr144921	transcription start site region 144921	1342 bp downstream
Tssr144922	transcription start site region 144922	1315 bp downstream
Tssr144923	transcription start site region 144923	1283 bp downstream
Tssr144924	transcription start site region 144924	1265 bp downstream
Tssr144925	transcription start site region 144925	1242 bp downstream
Tssr144926	transcription start site region 144926	1219 bp downstream
Tssr144927	transcription start site region 144927	1840 bp upstream
Tssr148442	transcription start site region 148442	1539 bp downstream