rs33818929 SNP Detail

Summary

• ID
  rs33818929
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:47817340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGACCCT GGGACAACAA
  GCCTTGTCCT GTGCCTGTCA CCACAGTGTC CTCTGGGACT AGTCCCCCAT ATAGAAGTGG
  TTCTGCTGCT GCTGCCTGGC ACTGCCTAGC ACAGCAGGCT ACCAACTCAT TGGACCCTTT
  TCCCTCTGCC AGTGTTGGGG ACATTGTGGA ATGAGATCAG AGTTTCTAGC TACAGAGACT
  K
  GAGATGGGAA GTGTCTCTGA TCATTCCGTC ACGGCATCAG TCTGTGCTCA ATCCTTGAAC
  CCGTGGTCAT GGCTCCCACG GTTGTGTTTC TATTGCTCAA GGACTTGGGG TCCTAGCAGA
  AAGTTACACA GCACCGTTGA GTGTAAGTGG GTTAGACGTA GCGTTTCACT GTCTGTCTTT
  AATAGCTGTA TTAGATCATC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48365729	NES12227577	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33818929					SNP	T	T	T	T	T	T	G	T	T	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48365729	NES12227577	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47817340 () rs orientation: forward

Symbol	Name	Function Class
Ccnd3	cyclin D3	Intron
Cpgi9262	CpG island 9262	1070 bp distal
Rr370265	regulatory region 370265	1734 bp downstream
Rr370266	regulatory region 370266	1267 bp downstream
Rr370267	regulatory region 370267	1549 bp upstream
Rr528023	regulatory region 528023	1256 bp distal
Rr528024	regulatory region 528024	514 bp distal
Rr528025	regulatory region 528025	607 bp proximal
Tssr144917	transcription start site region 144917	1571 bp downstream
Tssr144918	transcription start site region 144918	1455 bp downstream
Tssr144919	transcription start site region 144919	1349 bp downstream
Tssr144920	transcription start site region 144920	1331 bp downstream
Tssr144921	transcription start site region 144921	1310 bp downstream
Tssr144922	transcription start site region 144922	1283 bp downstream
Tssr144923	transcription start site region 144923	1251 bp downstream
Tssr144924	transcription start site region 144924	1233 bp downstream
Tssr144925	transcription start site region 144925	1210 bp downstream
Tssr144926	transcription start site region 144926	1187 bp downstream
Tssr144927	transcription start site region 144927	1872 bp upstream
Tssr148442	transcription start site region 148442	1571 bp downstream