rs33818933 SNP Detail

Summary

• ID
  rs33818933
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:47817013 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAAGGAGA TGTTTGGGGT
  GGCTTCCAGA GGATGGTTGT TGACTTCAGT ATTAGATGGG GGGGGGGTTG TCTTGGGGGT
  ACTATTTCCC CTTGAGACAA ACTGAATTGC AATAATGTTG TTGGGCACTG GGCTATACTG
  GTAACTGGGA AATAGCTCCT GCTTATACCA CTCAGTTCCC AGCATAAGGA AGTAGGAATA
  S
  ACAGAAGCAG TTCTGGGAAA GACAAGCTGC CAACTGGATC CCCTGAAATC CCAATTGGAT
  GTGGCTGAAT GGGCCCAGCC GGGCATGATA GACCAGTCCA TACCATACTG GACACCCACT
  CCCCATCCTG GACCCTGGGA CAACAAGCCT TGTCCTGTGC CTGTCACCAC AGTGTCCTCT
  GGGACTAGTC CCCCATATAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss48365733	NES12227573	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33818933					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48365733	NES12227573	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47817013 () rs orientation: forward

Symbol	Name	Function Class
Ccnd3	cyclin D3	Intron
Cpgi9262	CpG island 9262	743 bp distal
Rr370265	regulatory region 370265	1407 bp downstream
Rr370266	regulatory region 370266	940 bp downstream
Rr370267	regulatory region 370267	1876 bp upstream
Rr528023	regulatory region 528023	929 bp distal
Rr528024	regulatory region 528024	187 bp distal
Rr528025	regulatory region 528025	934 bp proximal
Tssr144917	transcription start site region 144917	1244 bp downstream
Tssr144918	transcription start site region 144918	1128 bp downstream
Tssr144919	transcription start site region 144919	1022 bp downstream
Tssr144920	transcription start site region 144920	1004 bp downstream
Tssr144921	transcription start site region 144921	983 bp downstream
Tssr144922	transcription start site region 144922	956 bp downstream
Tssr144923	transcription start site region 144923	924 bp downstream
Tssr144924	transcription start site region 144924	906 bp downstream
Tssr144925	transcription start site region 144925	883 bp downstream
Tssr144926	transcription start site region 144926	860 bp downstream
Tssr148442	transcription start site region 148442	1898 bp downstream