rs33819075 SNP Detail

Summary

• ID
  rs33819075
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47867526 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGTTGCC CTGTCTGTCC
  TGGAACTCTC TCTGTAGACC AGGCTGGCTT GGCATTTCAG AGATCTGCCT GCTTCTGCCT
  CCTGAGAGCT GGGATTAAAG GCATGTGCCA CCACTGCCAG GCTTCACACA CAATTTTTTT
  AAAAGTATAA TGTATGATAT GAATTACTCC AAGTCTATTC TATACAGAGA ACCGTGGGAC
  R
  CCAATAGGCC AGACATGATG ACACATACCA GTGGTCCCAG CACTCAGGAG GTAGAGACTC
  CCTCCTAAGA TCAGAATGTT GAAGGCCATC CTCAACTACC TAGCAACTTC AAGGCCAGCT
  TGGACTACAT GAGCCCCTGA CAGACTCAGA AGAAATACCA GATTGGCCAA TTATCTTTGT
  ACCCCCAAGT CCCTTTCAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48365625	NES12224722	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33819075					SNP	G	G	G	G	G	G	G	G	G	G	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48365625	NES12224722	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47867526 () rs orientation: forward

Symbol	Name	Function Class
Ccnd3	cyclin D3	within coordinates
Rr335190	regulatory region 335190	1726 bp distal
Rr335191	regulatory region 335191	1126 bp distal
Rr335192	regulatory region 335192	526 bp distal
Rr335193	regulatory region 335193	within coordinates
Tssr144956	transcription start site region 144956	918 bp upstream
Tssr144957	transcription start site region 144957	1003 bp upstream
Tssr144958	transcription start site region 144958	1099 bp upstream
Tssr144959	transcription start site region 144959	1116 bp upstream
Tssr144960	transcription start site region 144960	1186 bp upstream
Tssr144961	transcription start site region 144961	1227 bp upstream
Tssr144962	transcription start site region 144962	1245 bp upstream
Tssr144963	transcription start site region 144963	1306 bp upstream
Tssr144964	transcription start site region 144964	1804 bp upstream