rs33819076 SNP Detail

Summary

• ID
  rs33819076
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47867465 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACAGTTT TGTTTTGTTT
  TGTTTTGTTT TGTTTTGTTT TTTTCTGAGA CAGGGTTTTC TCTGTGTTGC CCTGTCTGTC
  CTGGAACTCT CTCTGTAGAC CAGGCTGGCT TGGCATTTCA GAGATCTGCC TGCTTCTGCC
  TCCTGAGAGC TGGGATTAAA GGCATGTGCC ACCACTGCCA GGCTTCACAC ACAATTTTTT
  W
  AAAAGTATAA TGTATGATAT GAATTACTCC AAGTCTATTC TATACAGAGA ACCGTGGGAC
  GCCAATAGGC CAGACATGAT GACACATACC AGTGGTCCCA GCACTCAGGA GGTAGAGACT
  CCCTCCTAAG ATCAGAATGT TGAAGGCCAT CCTCAACTAC CTAGCAACTT CAAGGCCAGC
  TTGGACTACA TGAGCCCCTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss48365626	NES12224721	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs33819076					SNP	T	T	T	T	T	T	T	T	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48365626	NES12224721	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47867465 () rs orientation: forward

Symbol	Name	Function Class
Ccnd3	cyclin D3	within coordinates
Rr335190	regulatory region 335190	1665 bp distal
Rr335191	regulatory region 335191	1065 bp distal
Rr335192	regulatory region 335192	465 bp distal
Rr335193	regulatory region 335193	within coordinates
Tssr144956	transcription start site region 144956	979 bp upstream
Tssr144957	transcription start site region 144957	1064 bp upstream
Tssr144958	transcription start site region 144958	1160 bp upstream
Tssr144959	transcription start site region 144959	1177 bp upstream
Tssr144960	transcription start site region 144960	1247 bp upstream
Tssr144961	transcription start site region 144961	1288 bp upstream
Tssr144962	transcription start site region 144962	1306 bp upstream
Tssr144963	transcription start site region 144963	1367 bp upstream
Tssr144964	transcription start site region 144964	1865 bp upstream