rs33819077 SNP Detail

Summary

• ID
  rs33819077
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47866562 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGACCAC CACTCTCCTC
  TGTCTCCCAG TGTTCCTTTG ATACTGAAAT CATCTAATAA GAAGGAGTTC CTTAAGCAGA
  GTTGAACACA TGATGCAGAC CTAGAGTCCA GCCTACCTAG GAGGCCCATG TGGGAAGAGA
  TAGCATGAAT CCTGGAATCC AAGACCAGCA TGGACAACAG GAGAGACGTA GCTAAAACAA
  R
  CAAATAAATA AGATGGAGAG AGTAAAGTAC TACTGCTACT AATAAATGAT TAAAATATTA
  TCTGTGTAAA TTAAATGATC GTGTATGTTT AAATTTTTTT CAAGAAGAGT ATGGGGCTGG
  AAAGATGGCT CAGTGGTTAA GAGAACTGGC TGTTCTTCCA GAAAACCTGG GTTTTATTCT
  TAGCACCCAC CAGACAACTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss48365627	NES12224763	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33819077					SNP	G	G	G	G	G	G	A	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48365627	NES12224763	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47866562 () rs orientation: forward

Symbol	Name	Function Class
Ccnd3	cyclin D3	within coordinates
Rr335188	regulatory region 335188	1962 bp distal
Rr335189	regulatory region 335189	1362 bp distal
Rr335190	regulatory region 335190	762 bp distal
Rr335191	regulatory region 335191	162 bp distal
Rr335192	regulatory region 335192	239 bp proximal
Rr335193	regulatory region 335193	639 bp proximal
Tssr144956	transcription start site region 144956	1882 bp upstream
Tssr144957	transcription start site region 144957	1967 bp upstream