rs33819078 SNP Detail

Summary

• ID
  rs33819078
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47866503 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAATTCACT TTGAAGCCCA
  AGCTGGACTG TGTCAACCTC CCAGGGTTTA GATTCCAGGC CTGGACCACC ACTCTCCTCT
  GTCTCCCAGT GTTCCTTTGA TACTGAAATC ATCTAATAAG AAGGAGTTCC TTAAGCAGAG
  TTGAACACAT GATGCAGACC TAGAGTCCAG CCTACCTAGG AGGCCCATGT GGGAAGAGAT
  R
  GCATGAATCC TGGAATCCAA GACCAGCATG GACAACAGGA GAGACGTAGC TAAAACAAGC
  AAATAAATAA GATGGAGAGA GTAAAGTACT ACTGCTACTA ATAAATGATT AAAATATTAT
  CTGTGTAAAT TAAATGATCG TGTATGTTTA AATTTTTTTC AAGAAGAGTA TGGGGCTGGA
  AAGATGGCTC AGTGGTTAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48365628	NES12224762	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33819078					SNP	A	A	A	A	A	A	G	A	A	A	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48365628	NES12224762	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47866503 () rs orientation: forward

Symbol	Name	Function Class
Ccnd3	cyclin D3	within coordinates
Rr335188	regulatory region 335188	1903 bp distal
Rr335189	regulatory region 335189	1303 bp distal
Rr335190	regulatory region 335190	703 bp distal
Rr335191	regulatory region 335191	103 bp distal
Rr335192	regulatory region 335192	298 bp proximal
Rr335193	regulatory region 335193	698 bp proximal
Tssr144956	transcription start site region 144956	1941 bp upstream