rs33819547 SNP Detail

Summary

• ID
  rs33819547
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48045369 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCCTCTGG ATCCTCGGGG
  ATGTCTTCCT CAGGTCTTAC TATGCTGTCT TCGACATGGG CAATAACAGG GTGGGCCTTG
  CCCCTTCTGT CTAGACTTGA CATCTAGACA AACCCCCCCC CCACCCCCGT GCCCTTCCTT
  CTTCCCCTCA GCCTGTCCCA TCTGCCCCGC CTCTCTGTAT CCAGCTTTCC TTTTCTGGAA
  M
  CCTAGACATT CCCTAATAAT AAATAGTCCT CCATATTGAC CAGCCTGTTG AGTCATTTGT
  ATGTAGGGGG TGAGTATTGG GGGAGCTGGG CAAAGCTGTG CCATGTCAGA TTCCTTGGGT
  CTCGGGGAAC TGTCAGAGTG GGAGACAGGG CAAGTTCCGC TTTGATTGAC CTTAGTGGCC
  ACAAGGTTTC CCTGTGGGTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss48365351	NES12216185	PERLEGEN	MM_PANEL2	f	SNP	A	A	C	A	A	C	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs33819547					SNP	A	A	C	A	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48365351	NES12216185	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48045369 () rs orientation: forward

Symbol	Name	Function Class
Pgc	progastricsin (pepsinogen C)	within coordinates
Tssr145028	transcription start site region 145028	1991 bp downstream
Tssr145029	transcription start site region 145029	1974 bp downstream
Tssr145030	transcription start site region 145030	1479 bp downstream
Tssr145031	transcription start site region 145031	1471 bp downstream
Tssr145032	transcription start site region 145032	1386 bp downstream
Tssr145033	transcription start site region 145033	1384 bp downstream
Tssr145034	transcription start site region 145034	1373 bp downstream
Tssr145035	transcription start site region 145035	689 bp downstream
Tssr145036	transcription start site region 145036	660 bp downstream
Tssr145037	transcription start site region 145037	633 bp downstream
Tssr145038	transcription start site region 145038	614 bp downstream
Tssr145039	transcription start site region 145039	243 bp downstream
Tssr145040	transcription start site region 145040	209 bp downstream
Tssr145041	transcription start site region 145041	197 bp downstream
Tssr145042	transcription start site region 145042	146 bp downstream
Tssr145043	transcription start site region 145043	120 bp downstream
Tssr145044	transcription start site region 145044	107 bp downstream
Tssr145045	transcription start site region 145045	90 bp downstream
Tssr145046	transcription start site region 145046	39 bp downstream
Tssr145047	transcription start site region 145047	23 bp downstream
Tssr145048	transcription start site region 145048	3 bp downstream
Tssr148471	transcription start site region 148471	1984 bp upstream
Tssr148472	transcription start site region 148472	1970 bp upstream
Tssr148473	transcription start site region 148473	1956 bp upstream
Tssr148474	transcription start site region 148474	1938 bp upstream
Tssr148475	transcription start site region 148475	1394 bp upstream
Tssr148476	transcription start site region 148476	1367 bp upstream
Tssr148477	transcription start site region 148477	1334 bp upstream
Tssr148478	transcription start site region 148478	634 bp upstream
Tssr148479	transcription start site region 148479	582 bp upstream
Tssr148480	transcription start site region 148480	116 bp upstream
Tssr148481	transcription start site region 148481	80 bp upstream
Tssr148482	transcription start site region 148482	31 bp downstream