rs33819548 SNP Detail

Summary

• ID
  rs33819548
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48043409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTTGCAAAA TGAGGGGAGG
  AGGTGTTTTC CTCTGAAAAT GGCTAACCGA CCATGGGAAT TGGCTGTTCA CCCAGACTCT
  TCTTCCTTTG GTCCTCTGTA GCCAGCAGGG GTCTAACGGC GGGCAGATTG TGTTCGGTGG
  CGTGGACGAG AACCTGTACA CTGGCGAGCT CACCTGGATT CCTGTCACCC AGGAGCTTTA
  Y
  TGGCAGATCA CCATTGACGA GTGAGTCTGG TCGGGCCTCA GACATTCTAA GCCATCCACC
  CACCCATCCC GGCACTGCTG GTAGAGGGTG GGTGGGAGAC CCTCCTCCAA AGTCATAGGT
  CACCTATGCA GCAGTCTGGC AGCCCAGCCA ACTCCGAAGA AGAGAGGGTA TGGCCACACA
  GGGACAGTCA GCACATATGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss48365352	NES12216184	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs33819548					SNP	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48365352	NES12216184	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48043409 () rs orientation: forward

Symbol	Name	Function Class
Pgc	progastricsin (pepsinogen C)	within coordinates
Rr528106	regulatory region 528106	1754 bp distal
Tssr5149	transcription start site region 5149	996 bp downstream
Tssr145017	transcription start site region 145017	1879 bp downstream
Tssr145018	transcription start site region 145018	1873 bp downstream
Tssr145019	transcription start site region 145019	1842 bp downstream
Tssr145020	transcription start site region 145020	1813 bp downstream
Tssr145021	transcription start site region 145021	1783 bp downstream
Tssr145022	transcription start site region 145022	1756 bp downstream
Tssr145023	transcription start site region 145023	1718 bp downstream
Tssr145024	transcription start site region 145024	1616 bp downstream
Tssr145025	transcription start site region 145025	1253 bp downstream
Tssr145026	transcription start site region 145026	1013 bp downstream
Tssr145027	transcription start site region 145027	72 bp downstream
Tssr145028	transcription start site region 145028	31 bp downstream
Tssr145029	transcription start site region 145029	14 bp downstream
Tssr145030	transcription start site region 145030	470 bp upstream
Tssr145031	transcription start site region 145031	486 bp upstream
Tssr145032	transcription start site region 145032	494 bp upstream
Tssr145033	transcription start site region 145033	575 bp upstream
Tssr145034	transcription start site region 145034	577 bp upstream
Tssr145035	transcription start site region 145035	1267 bp upstream
Tssr145036	transcription start site region 145036	1275 bp upstream
Tssr145037	transcription start site region 145037	1319 bp upstream
Tssr145038	transcription start site region 145038	1329 bp upstream
Tssr145039	transcription start site region 145039	1694 bp upstream
Tssr145040	transcription start site region 145040	1718 bp upstream
Tssr145041	transcription start site region 145041	1755 bp upstream
Tssr145042	transcription start site region 145042	1773 bp upstream
Tssr145043	transcription start site region 145043	1828 bp upstream
Tssr145044	transcription start site region 145044	1845 bp upstream
Tssr145045	transcription start site region 145045	1855 bp upstream
Tssr145046	transcription start site region 145046	1874 bp upstream
Tssr145047	transcription start site region 145047	1922 bp upstream
Tssr145048	transcription start site region 145048	1954 bp upstream
Tssr148467	transcription start site region 148467	1852 bp upstream
Tssr148468	transcription start site region 148468	1815 bp upstream
Tssr148469	transcription start site region 148469	1721 bp upstream
Tssr148470	transcription start site region 148470	46 bp upstream
Tssr148471	transcription start site region 148471	24 bp upstream
Tssr148472	transcription start site region 148472	10 bp upstream
Tssr148473	transcription start site region 148473	within coordinates
Tssr148474	transcription start site region 148474	14 bp downstream
Tssr148475	transcription start site region 148475	543 bp downstream
Tssr148476	transcription start site region 148476	571 bp downstream
Tssr148477	transcription start site region 148477	602 bp downstream
Tssr148478	transcription start site region 148478	1314 bp downstream
Tssr148479	transcription start site region 148479	1352 bp downstream
Tssr148480	transcription start site region 148480	1830 bp downstream
Tssr148481	transcription start site region 148481	1860 bp downstream
Tssr148482	transcription start site region 148482	1991 bp downstream