rs33820354 SNP Detail

Summary

• ID
  rs33820354
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:48040098 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGG GCAGCAGCTG AGTCCTTCTC
  Y
  GCTTGCTTTT GGAGTTGCTG AGCCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss48365359	NES12216315	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs33820354					SNP	C	C	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48365359	NES12216315	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48040098 () rs orientation: forward

Symbol	Name	Function Class
Pgc	progastricsin (pepsinogen C)	Intron
Rr528106	regulatory region 528106	1536 bp proximal
Tssr5147	transcription start site region 5147	422 bp downstream
Tssr5148	transcription start site region 5148	137 bp downstream
Tssr145004	transcription start site region 145004	431 bp downstream
Tssr145005	transcription start site region 145005	410 bp downstream
Tssr145006	transcription start site region 145006	381 bp downstream
Tssr145007	transcription start site region 145007	349 bp downstream
Tssr145008	transcription start site region 145008	328 bp downstream
Tssr145009	transcription start site region 145009	300 bp downstream
Tssr145010	transcription start site region 145010	77 bp upstream
Tssr145011	transcription start site region 145011	90 bp upstream
Tssr145012	transcription start site region 145012	102 bp upstream
Tssr145013	transcription start site region 145013	121 bp upstream
Tssr145014	transcription start site region 145014	907 bp upstream
Tssr145015	transcription start site region 145015	969 bp upstream
Tssr145016	transcription start site region 145016	980 bp upstream
Tssr145017	transcription start site region 145017	1425 bp upstream
Tssr145018	transcription start site region 145018	1437 bp upstream
Tssr145019	transcription start site region 145019	1468 bp upstream
Tssr145020	transcription start site region 145020	1489 bp upstream
Tssr145021	transcription start site region 145021	1515 bp upstream
Tssr145022	transcription start site region 145022	1547 bp upstream
Tssr145023	transcription start site region 145023	1574 bp upstream
Tssr145024	transcription start site region 145024	1685 bp upstream
Tssr148459	transcription start site region 148459	372 bp upstream
Tssr148460	transcription start site region 148460	320 bp upstream
Tssr148461	transcription start site region 148461	308 bp upstream
Tssr148462	transcription start site region 148462	265 bp upstream
Tssr148463	transcription start site region 148463	105 bp downstream
Tssr148464	transcription start site region 148464	183 bp downstream
Tssr148465	transcription start site region 148465	948 bp downstream
Tssr148466	transcription start site region 148466	961 bp downstream
Tssr148467	transcription start site region 148467	1456 bp downstream
Tssr148468	transcription start site region 148468	1487 bp downstream
Tssr148469	transcription start site region 148469	1577 bp downstream