rs33820355 SNP Detail

Summary

• ID
  rs33820355
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:48039741 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTGT CCTCAAAGAC TTTCTGAAGA
  R
  CCACAAGTAT GACCCTGGCC AGAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss48365360	NES12216313	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs33820355					SNP	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48365360	NES12216313	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48039741 () rs orientation: forward

Symbol	Name	Function Class
D17Mit201	DNA segment, Chr 17, Massachusetts Institute of Technology 201	1481 bp distal
Pgc	progastricsin (pepsinogen C)	Coding-NonSynonymous
Rr528106	regulatory region 528106	1893 bp proximal
Tssr5147	transcription start site region 5147	65 bp downstream
Tssr5148	transcription start site region 5148	494 bp downstream
Tssr145003	transcription start site region 145003	1968 bp downstream
Tssr145004	transcription start site region 145004	74 bp downstream
Tssr145005	transcription start site region 145005	53 bp downstream
Tssr145006	transcription start site region 145006	24 bp downstream
Tssr145007	transcription start site region 145007	within coordinates
Tssr145008	transcription start site region 145008	14 bp upstream
Tssr145009	transcription start site region 145009	31 bp upstream
Tssr145010	transcription start site region 145010	434 bp upstream
Tssr145011	transcription start site region 145011	447 bp upstream
Tssr145012	transcription start site region 145012	459 bp upstream
Tssr145013	transcription start site region 145013	478 bp upstream
Tssr145014	transcription start site region 145014	1264 bp upstream
Tssr145015	transcription start site region 145015	1326 bp upstream
Tssr145016	transcription start site region 145016	1337 bp upstream
Tssr145017	transcription start site region 145017	1782 bp upstream
Tssr145018	transcription start site region 145018	1794 bp upstream
Tssr145019	transcription start site region 145019	1825 bp upstream
Tssr145020	transcription start site region 145020	1846 bp upstream
Tssr145021	transcription start site region 145021	1872 bp upstream
Tssr145022	transcription start site region 145022	1904 bp upstream
Tssr145023	transcription start site region 145023	1931 bp upstream
Tssr148459	transcription start site region 148459	15 bp upstream
Tssr148460	transcription start site region 148460	1 bp downstream
Tssr148461	transcription start site region 148461	40 bp downstream
Tssr148462	transcription start site region 148462	59 bp downstream
Tssr148463	transcription start site region 148463	462 bp downstream
Tssr148464	transcription start site region 148464	540 bp downstream
Tssr148465	transcription start site region 148465	1305 bp downstream
Tssr148466	transcription start site region 148466	1318 bp downstream
Tssr148467	transcription start site region 148467	1813 bp downstream
Tssr148468	transcription start site region 148468	1844 bp downstream
Tssr148469	transcription start site region 148469	1934 bp downstream