rs33820880 SNP Detail

Summary

• ID
  rs33820880
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:181802868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAAAAGCA AGCTATCTAC
  TACAGCTGGG AAAACACATG CCTCACTTTC TTCCATAGAC AGTTTCTCCA TTAAGATGAG
  GAACCTGGTC CTTCCAATGA AGTTCAACAT ACTTGAGTTC CAAGAATTAG ACTAGCTATG
  ATAGTTAACA TCCAACATAA ATTCCAGAAA AGATTATTTG AAGATTAGAA AAAAACGAGA
  Y
  AGCACATACT CAACCAGGTC TAGACCATAT TCAACAGCTC ATTCCAGGAG CTGTGAAGAG
  CTAGCTTGTA GCAAACGAAC TTCTAGAAGT TACTCGTTTA ATATTAAAAT CTCATTATCA
  TTTTGTAATT TGCTCCATCA TACAACCTGC TTTATTGTGA AGGTCTCCCC CATAAAGCGT
  GCAGTGAAAC TGAACACTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49538784	NES12808280	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33820880					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49538784	NES12808280	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:181802868 () rs orientation: forward

Symbol	Name	Function Class
Enah	ENAH actin regulator	Intron
Rr424830	regulatory region 424830	within coordinates