rs33825949 SNP Detail

Summary

• ID
  rs33825949
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:28367059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGAGATAT GTAGGAGACA
  GGACCAGCCC AAGGACAGTC TTGGCTGTGC AGTGAGCTCA GTTTCTGTTT GTCTTGAGGA
  GTCTCCTTCA TTATTGAACA AAATAAATGT ATAGCTTTTA AAACATCAAT TCGTTTCATT
  TTTTATTCAG GGGAAAGGAA AATGAGGAGA CACAATCCAC AAACTTTAAC TGTACATTCT
  Y
  CAGACTTAAG ATGTCTTCAT ATTTAAACTT AATCAACAAC AACAAACCCT CTCTTCAGAA
  TGCCCCTGTA ACTAACACAA CATAAAAGTC TCACTCCTGA CTTAAATGCT ACTGTTGTCT
  ATATTTTAAC CTAGCATTTA ATTTCTACAA ATAAAATATT GTCATTTTAT GTGGGTAAGA
  CTTGTTAGCT GATCTTTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47853002	NES11689881	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33825949					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47853002	NES11689881	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:28367059 () rs orientation: forward

Symbol	Name	Function Class
Rr148759	regulatory region 148759	342 bp proximal
Zfp800	zinc finger protein 800	within coordinates