rs33826845 SNP Detail

Summary

• ID
  rs33826845
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:28368435 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTGTGTG TGTGTGTGTG
  TGTGTGTATA GAGAGAGAGA GAGAAATTTT ACAATAGACT GGTAAAACAT TAGATTAAAC
  AATTCAAGAT AAAAATGAAC ATAGATAAAT TTAAAGAAAT CACCAATAAT TCAGTACAAA
  GAGGAAAGAG AATTTATCAC TGGTGACTTG TTTCTGGTTT GCAAAGCAAT TTGTTTTATT
  Y
  CTTCCTGCTT ATTTTTGTTA ATGCCTTATC ACTCTATCGT TTCTGAGGGA TACCTGGATA
  CCTCTTTCAA CAATTCATAT AATGTCATGT GATACTCTGT ATCCAGTAAG TCTAAAAGGC
  TACCTGCATT AAGGCTCTAT CTCCTTCATT TGTAGTTCTA CTGACCTTGG TCACGGTGAG
  ACAGAGCCTT TAACTCCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47853008	NES11689811	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33826845					SNP	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47853008	NES11689811	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:28368435 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17213	CpG island 17213	907 bp proximal
Rr139738	regulatory region 139738	766 bp proximal
Rr148759	regulatory region 148759	835 bp distal
Zfp800	zinc finger protein 800	within coordinates