rs33829540 SNP Detail

Summary

• ID
  rs33829540
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:184824230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATCTGCTT GATTCTCAGA
  CAAGAAGACA CCAGTTCCTT GTCAGCCACC CCACATATAC AATGAGCTAC TGTCAGTAAG
  CTCTCTGACG CGTACGACGA CGTCTGGCAA ACGTGGTTTA TTTTTAACAG TGTGAGGGAG
  GAGGGGAGGG ACCCCTCTGG CCTCTCCCCG GATGTCCTCC GTGTGGGATA CTGTTGGTCG
  K
  TTTTGAAGGA CTCAGTCAGT GGGTAAAGTA GGGAGGGGCG GCAGACTGTT CAAGGCAACG
  GGAGACTGGG GTAGGGGGGA CCGTGCTAGA CTTAGCGGGA GACTGGGGGA GGGGGGACCG
  TGCTAGACTT AGCGGGGAGA AGCCTCGAAG ATCAAAGAAC TGCTTTGCTG AAGTTGACTT
  TTCCAGACCT TTCCGAAGTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss49541876	NES12925231	PERLEGEN	MM_PANEL2	f	SNP	T	T	G	T	T	T	T	G		G	T	T		T
ss320172331	CHEV_1_186915912	CHEVERUD	SCREENING_POP	f	SNP									G				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs33829540					SNP	T	T	G	T	T	T	T	G	G	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49541876	NES12925231	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:184824230 () rs orientation: forward

Symbol	Name	Function Class
4930433J02Rik	RIKEN cDNA 4930433J02 gene	within coordinates
Gm37662	predicted gene, 37662	within coordinates
Rr372582	regulatory region 372582	within coordinates
Rr425334	regulatory region 425334	within coordinates