rs33830277 SNP Detail

Summary

• ID
  rs33830277
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:184823266 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTGTGCCA GTTTGTGCCA
  TGGTCAGCAG CATAATCCAG GTGTCAACCA GTGAGGAAGA TGGAAACTTG GGTTGTTAGT
  GCCTCAACTC ACCTCAAGAC TCAAACCACT AACTCTTTGA ATCTGCTTGT TTGAAACGGC
  ATTTAAAATG ATACCTGCTC ACGACACTCT GTCTGGCTCC TGGGCATGTG GCTGGGTTCT
  Y
  GCCTATGTTG GTAGTACCCA GTGGTGTCAG TACACAGAAC AGTTCTCAGC TCTGTGGGGA
  GGAGGGGGAC GATGTTTGAG AGGGTATTTA GTTAAGGGGA AAATGATGGC CTCTCACTGG
  GCCTCCCAGT CTGTACGGGT TCTAACACTT CAGGGTCTTG GGAAGGCTAG AAGATCTTTA
  GGTGCAGCTC CTGACCGCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49541883	NES12899380	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33830277					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49541883	NES12899380	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:184823266 () rs orientation: forward

Symbol	Name	Function Class
4930433J02Rik	RIKEN cDNA 4930433J02 gene	within coordinates
Gm37662	predicted gene, 37662	within coordinates
Rr372582	regulatory region 372582	28 bp upstream
Rr425334	regulatory region 425334	767 bp proximal