rs33831145 SNP Detail

Summary

• ID
  rs33831145
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:184822336 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGACAGGG AAGTATGCAG
  AATTTAACCT GATATAGGTC ACGAAGTTCT TTGAGCAGTA GGCCCACACC CAGCCCACAC
  TCTGACTCCA ATCCATTTGC TTTGCAGGGA GACAGAGGAA GGAGTCCACA GAGGCATCAC
  CAAGTTTCCT GGGAAACAGT AGGTCACACA TCTCCTGGAA CTGCTTCTAG AAGACCTGAC
  Y
  CAGATGGGTA GAGCTCACAT TACTGGTCTC TGTGGGATTA GTTTTGGGAT TTAGTTTTCT
  GAGACAGTAT CTCAATATAT TGTTCAGTCT GACCTCAAAT TTATAATCTT TCTGCCTTAG
  CCTCCCAAAT TCTGAGGTTA CAAACATATA TCACCAGACC AATTAATATG TGTTTCTAAC
  ACACTCAAAA CAAAACTCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss49541891	NES12899458	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	C	T	T		C	T	T		T
ss320172315	CHEV_1_186914018	CHEVERUD	SCREENING_POP	f	SNP									C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs33831145					SNP	T	T	C	T	T	C	T	T	C	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49541891	NES12899458	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:184822336 () rs orientation: forward

Symbol	Name	Function Class
4930433J02Rik	RIKEN cDNA 4930433J02 gene	within coordinates
Gm37662	predicted gene, 37662	within coordinates
Rr372582	regulatory region 372582	958 bp upstream
Rr425334	regulatory region 425334	1697 bp proximal