rs33832587 SNP Detail

Summary

• ID
  rs33832587
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:42459417 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGACAGCG CGAGGGGAAT
  ATGGAAGGAC AGAGATGGAG ACACGGAAAT GGTCTTCCTA CGGAGCAACG AAGGCGAACT
  TCCCCTCGTT CCCCATGCTT GGTACTGCTT CCAATCTCTC CCTCCACACA GGCGTGCAGA
  GTGGGCAGCT CTCTGCAGAC TGCAGATCTT CTGTGGAAAG GCGAAAATCA CAGCCGCAGT
  Y
  TCAGAGGCAG ATTAAGCTCC TCGCTGCCGG AGCCCCGGCG CCGAGAGGGG AAACTAGATT
  GCTGGGAGAT CTTCCAAGGG GAGAGGTGGC CAGATCCGAG TTTCCGGGGA CAGCCGCGCA
  CGCAGCGGCG AAGGGTCCCC GAAGTTCATT ACCCTGTGAC TTTGTGCCTG TCGCTGCGGG
  CCGGGTCTCT GGTAATATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47856253	NES11955239	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs33832587					SNP	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47856253	NES11955239	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:42459417 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1484	CpG island 1484	within coordinates
Gm38491	predicted gene, 38491	371 bp upstream
Nr2e1	nuclear receptor subfamily 2, group E, member 1	mRNA-UTR
Rr430584	regulatory region 430584	within coordinates
Rr430585	regulatory region 430585	201 bp proximal
Rr430586	regulatory region 430586	425 bp proximal
Tssr93098	transcription start site region 93098	366 bp upstream
Tssr97447	transcription start site region 97447	158 bp downstream
Tssr97448	transcription start site region 97448	183 bp downstream
Tssr97449	transcription start site region 97449	207 bp downstream
Tssr97450	transcription start site region 97450	225 bp downstream