rs33834014 SNP Detail

Summary

• ID
  rs33834014
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:184545530 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             AATTCACAAT TATAGATAAG TTCTACCTGT CTTGATAGGA ACAGAATGAA
  M
  TGTAAAGCCA CAGTCTATGA ACAAAATAAC CCCATGACCT CTGAAGTCAT           
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49543861	NES12924372	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	C	A	A	A	A	C		A	A	C	A		A
ss320169585	CHEV_1_186637212	CHEVERUD	SCREENING_POP	f	SNP										C					A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33834014					SNP	A	A	A	C	A	A	A	A	C	C	A	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49543861	NES12924372	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:184545530 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1161	CpG island 1161	1996 bp distal
Gm70890	predicted gene, 70890	471 bp downstream
Mtarc2	mitochondrial amidoxime reducing component 2	mRNA-UTR
Rr425290	regulatory region 425290	1399 bp distal
Rr425291	regulatory region 425291	893 bp distal
Rr425292	regulatory region 425292	964 bp distal
Rr425293	regulatory region 425293	816 bp distal
Rr425294	regulatory region 425294	1112 bp proximal