rs33836334 SNP Detail

Summary

• ID
  rs33836334
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:42751070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCACAGGGA AGACACTGCT
  TCAGGGCCAA GCTGGTTTCT CATCAGCTCA GGTTGCCAGG GTTGTAGCTG CCCTGTGCTA
  CTCAATCCGA GGGCCTATAA AACAGTTCCT CACATATGTG AAACTTGACA TCACCCTCTG
  CTGAGCTGAG CTGAGCTGGA AAACTTAGAG CTTAGGATAC AGTTGATAGT GCAGCTTTGG
  M
  TGGGTCTGAG CACAGCCCGT TTTCAGATGT ACTTGATGCC TTTCATCTAA CAGAAACATT
  AGGGCTCACA CGATCCACTA GGATTCGAGT TCCAGAGAGC TGCACTGAGG GATCCTGAGG
  TGATGCTCTG CTTCTGTCAG AAGGGCAACA GCATGCTTTC GTCATCTTCA TCTTTCTCAG
  AGTTCATGAG AACAAGCATG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
ss38618974	mCV23303334	ABI	CRAMUS_MOUSE	f	SNP	C	C	A					A		A
ss47857647	NES11970489	PERLEGEN	MM_PANEL2	f	SNP	C		A	A	A	C	A		A	A	A	C	A	A
ss147084088	ENSMUSSNP2259421	ENSEMBL	ENSEMBL_Sanger	f	SNP			A							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
rs33836334					SNP	C	C	A	A	A	C	A	A	A	A	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47857647	NES11970489	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:42751070 () rs orientation: forward

Symbol	Name	Function Class
Gm66346	predicted gene, 66346	within coordinates
Rr219455	regulatory region 219455	within coordinates
Rr222710	regulatory region 222710	1998 bp proximal
Rr227612	regulatory region 227612	1271 bp distal
Scml4	Scm polycomb group protein like 4	within coordinates