rs33836335 SNP Detail

Summary

• ID
  rs33836335
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:42751884 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGTTTTTT AAATACTCGA
  TTTAGTTACT CCCTTCCTCC TTGTCTCTTC TTTGTTAATC TGGTAGAAAT CAAGGTGGCA
  TACTGGTCAT GTAGAATTGA CAAGCTCACT TACTCATCCA CCCACTCAAT ATAAGCCCCT
  TCCGCTTTAG CTCTGTGCTT ATCCTTATGG ATACAAAGGT GGGAAGGACA TGACTTTATC
  Y
  ACGAGACACT TCTAGTCTAA TTATGGTGCT GAGCAGGAAG GCTGGCAAGT CACGGGTGAG
  TCCCGTGCAT GGCAAGGCAG GCTATGCAGG GCACCATGCA AGAGGGAGAC TGAGATCATG
  CCTAGGATAT GCCCCTGAAC CTTTGGAAGG ACCCCTTTGC ATATGCCAGG GCAGAGAAGT
  GGAGAGAGAT ATGAGGCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47857649	NES11970490	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	C	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33836335					SNP	C	T	T	T	C	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47857649	NES11970490	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:42751884 () rs orientation: forward

Symbol	Name	Function Class
Gm66346	predicted gene, 66346	within coordinates
Rr219455	regulatory region 219455	84 bp distal
Rr222710	regulatory region 222710	1184 bp proximal
Scml4	Scm polycomb group protein like 4	within coordinates