rs33836341 SNP Detail

Summary

• ID
  rs33836341
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:42752471 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGAATTCA GTCACTTGTG
  CCCAGCAATG GAGAAGGTCC TGCCTTCTAA GAGGAACCCT TGAGGGTGTG GGTCTTGAAC
  AAAAGGAAAC CAGAAAGGAG GAACTTAACT CCCGAGTCTC CTGCCACCCC CAACTCCCAC
  ACTCAGATGG CTCCGCTTGG CTGTGTTGTC CAGCTCCATG GTCAGCTTTT ACTCTAAGCT
  R
  GTGTGAACCA GAGAGGTGCA TGCAGGCCTT CAACGCAGAT AGGGATCATA TTCTGTTGGC
  TCTAATCTGT CTTGGGGGCC CTAGTTTTAA AATGCTTTTC TTAAGAGATT AAAAAAAAAA
  AAAAAAAGGA TTGTCCAGGT AATATCTTGT GTTAGAAGAA ACTGCAAGAG CTAAGTCAAT
  TTAGGAAATT CACAGAGGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47857655	NES11970493	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33836341					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47857655	NES11970493	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:42752471 () rs orientation: forward

Symbol	Name	Function Class
Gm66346	predicted gene, 66346	within coordinates
Rr219455	regulatory region 219455	671 bp distal
Rr222710	regulatory region 222710	597 bp proximal
Scml4	Scm polycomb group protein like 4	within coordinates