rs33836538 SNP Detail

Summary

• ID
  rs33836538
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:143202020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    catacacag tctggctgtt ctagaactca
  ctataaagat cagactaaac ccaaattcac aaacatgtct acctcgtctc tcaattgcta
  gaattaaggg cgtgcactac ccggcccagc tCATCCTCAG TCTTTCTTTG GAGTACCTTC
  W
  TTTTGTGGCA TTATTTGAGA TGATCACCAT TTTTTCTTTA CAACAACCTT AAAACATCAA
  CAACAAAAAC AACCTAATAT TGTCTAGATT GTTTCTGGGG ATTTCTGGAG GACAAAATGC
  ACCACTTTTC AGGCGGTGCC TGGGCAGGCA                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss47358549	NES11520990	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	T	A		T	A	T		A
ss322477199	CHEV_7_150834188	CHEVERUD	SCREENING_POP	f	SNP											A				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs33836538					SNP	A	A	A	A	A	A	T	A	T	A	A	T	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47358549	NES11520990	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:143202020 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19986	CpG island 19986	914 bp proximal
E230032D23Rik	RIKEN cDNA E230032D23 gene	within coordinates
Rr167026	regulatory region 167026	580 bp proximal
Tnfrsf22	tumor necrosis factor receptor superfamily, member 22	within coordinates
Tssr75968	transcription start site region 75968	1313 bp downstream
Tssr75969	transcription start site region 75969	1331 bp downstream