rs33837004 SNP Detail

Summary

• ID
  rs33837004
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:42420863 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAGACCAG CTAAGGGCTG
  CAGAGCAAGA TCCGGTCCCA GAAAGACAAT TTCCAGCCCA TCTTACGAGA ATGTTTAAGT
  AGCCCTTTAG ATGGCATACA GGTATCCAGA GAGCAATTCT GTCTCCCCCT TGCTCTCCAG
  CTCCCTAAGG TGTCCTCTGT AATAGAGGCT TATTCAGTAG ATGTGTTCCT GGCTGTAGGA
  W
  AGGCATCAGG CCCTCGGGCA TAGCGCCATT GACTTCAGGG TCCCAGGAAG ATGTCCCTGT
  CTCTGGGTAC TGCCCACCAT GCAGTTGAAC ACTGATCAAG GTCTGAGCAA ATGTGGTTTG
  CCCTCCCCAT TTCATCAGAG CCTGTGGTGA CCCTGGGTGA CAAGATCTTG CTTCAGCTCC
  TGCTGACTGC TGAGGTTCAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss47856019	NES11956056	PERLEGEN	MM_PANEL2	f	SNP	A	T	A	T	T	A	A	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs33837004					SNP	A	T	A	T	T	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47856019	NES11956056	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:42420863 () rs orientation: forward

Symbol	Name	Function Class
Rr219444	regulatory region 219444	1338 bp proximal
Rr222699	regulatory region 222699	785 bp distal