rs33838021 SNP Detail

Summary

• ID
  rs33838021
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:191178710 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGCTCCCAG TTCCTGAGAT TACAAGTGTG TGCTGCCACA
  GCTGCCCGCC CCCCCTCTAT CCTCTTTTAC TGACCACCTT CGTGTTAGGT TCAAGAGCAG
  R
  GAATACAGAA CAACAACAAC AAAAACTAGA GAGCGTGAAG CACTGGGTAG TAGAGCTAAT
  GAATAACCAG CAAGTTCCAT AACCCGCCTT GTGCACCTG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49546429	NES12907229	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A	G	G	A	G		G	G	G	G		G
ss146505969	ENSMUSSNP3212067	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						G
ss320195310	CHEV_1_193270392	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33838021					SNP	G	A	A	A	A	A	A	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49546429	NES12907229	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191178710 () rs orientation: forward

Symbol	Name	Function Class
Gm32200	predicted gene, 32200	within coordinates
Rr372646	regulatory region 372646	within coordinates
Tssr15793	transcription start site region 15793	695 bp upstream