rs33838023 SNP Detail

Summary

• ID
  rs33838023
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:191178221 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTAAACCAC CAGAGTCATC TTTGAGCCAA GTCCTCCGGG
  CACAGCTGTG CAGAGAGTTC TAGATTAGCT TATCTGAGGT GGGTGATGCA CCTGGCGGCC
  R
  GATAAACAAG CACCCATCGG TCTCCTGACT GCAGATGCAA CGTGACCAGC TGCCTTCCTC
  ACGGTGGTGG ACTGCCGGTT CAAGGCATGA ACCAAAACA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49546431	NES12907297	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	G	G	G	A	G	A		G	A	A	A		A
ss320195301	CHEV_1_193269903	CHEVERUD	SCREENING_POP	f	SNP											A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33838023					SNP	A	G	G	G	G	G	G	A	G	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49546431	NES12907297	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191178221 () rs orientation: forward

Symbol	Name	Function Class
Gm32200	predicted gene, 32200	within coordinates
Rr372646	regulatory region 372646	within coordinates
Tssr15793	transcription start site region 15793	206 bp upstream