rs33838605 SNP Detail

Summary

• ID
  rs33838605
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:15256777 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTGTACT CAGAAACGCA
  TATTCTTACT GATAAAAACA TTTTCTTCTT GTAATTATAT CTTCCTCAGA TTGAATCACC
  CAAAGATATT CCCCAGATCT TACGATAGTG GATTTCTAGA TACCCACTCC TGCCTAAACA
  TATCTAAAGC TTACACTCAA ACTTATAAAT CAAAGGGAGA AAAGATAGTA CCATCGATAT
  Y
  GTGCATGTCT GAAGTGTTGT ATATTTATGC AATCATTGAC CTCACCTTAT ATCAGAAAAA
  TGGAAAAACA TTTTCTATAA AATATCTAAT AGTAAATGTT TAGCTTTGTG GTCTACCTGT
  TCTGCATCAA AATTACTAAA CACATCTATT ATAGCCTCAA AGTACCCATT GACAATATGG
  AAATAAGTGA ACATGTCTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47357678	NES11371564	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33838605					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47357678	NES11371564	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:15256777 () rs orientation: forward

Symbol	Name	Function Class
Rr803	regulatory region 803	within coordinates
Rr2234	regulatory region 2234	663 bp proximal