rs33838607 SNP Detail

Summary

• ID
  rs33838607
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:15257108 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTACTAAA CACATCTATT
  ATAGCCTCAA AGTACCCATT GACAATATGG AAATAAGTGA ACATGTCTAT GTTCTAGTAA
  GATCCTATTC CTAAAAATAG GCCAGGTTTC CTTAGCAGGC TTTATTGTAC CAACCTCTGT
  TCCATGTATA TAAATATTTC CAGTTTTTCT TAAAGTATAA ATGAAATGCT TGCAACTAAT
  W
  TTTCTAAAGC ACATACTAAA AACAAAACAT TTGCTTGAGA TTTTGTTGCT GTTGTTTTGG
  GTCTTCCATT CAGATTTCAA TGATTTATAT TTAGGAGTTG CTGAAACATG CCTTTCTGGT
  CTCACATAGC AGTGAGCTTG CAAGCTTTTG ATATGAAGAG TCTGGAAAAT GTTTATTTAG
  TGCAGTCATT CTGCCAAAGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47357681	NES11371520	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33838607					SNP	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47357681	NES11371520	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:15257108 () rs orientation: forward

Symbol	Name	Function Class
Rr803	regulatory region 803	within coordinates
Rr2234	regulatory region 2234	332 bp proximal
Rr275170	regulatory region 275170	293 bp proximal