rs33838648 SNP Detail

Summary

• ID
  rs33838648
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:42739508 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGAGAAAA CTTTAAAAAA
  AAAAAAAGTT TGGATATTTT ATGTCTTAAT CCCGAAGTCT CCCAAGAGAC TTTGAGATTC
  ACGCGTTTCT CCTTTTAAAA TGTTTTTGTT GCTTTCAGAG ACAGGTGAGG AGAGTCGGGG
  GGATCTAAAT GGTCCCTAGG ATGAGGAAAA ATCAGGTGGT TTGGTACAAA TATAAAGTTA
  Y
  AGAAGCCGCC AGGGTGTCTA GTAAATTACT CTAAATTTTA ATTAATGAGA CACAAAAGCC
  ATACTACAAG CTTTAAAAAT TACCCTTTCA TCAATAAGGT GATAATTAAC TTTCTCTAGA
  ATTAGCCATT CTCCGAGCCC CGGGCAGTAT GCCGCCTGCT AAGTTCGTTG GCATACTGCC
  AATTTTTAAC AATTGGTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47857581	NES11970995	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33838648					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47857581	NES11970995	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:42739508 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1495	CpG island 1495	589 bp proximal
Gm34006	predicted gene, 34006	within coordinates
Gm66346	predicted gene, 66346	1177 bp upstream
Rr368979	regulatory region 368979	982 bp downstream
Scml4	Scm polycomb group protein like 4	within coordinates
Tssr93120	transcription start site region 93120	1924 bp downstream
Tssr97454	transcription start site region 97454	485 bp downstream
Tssr97455	transcription start site region 97455	709 bp downstream