rs33838653 SNP Detail

Summary

• ID
  rs33838653
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:42740017 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACGCCATGGT GATGAATTAT GGTTTGCGAG CCTGTGCACA
  GCCCCCGGGC TTCATTCATG TTGCGCTTAC CTCGGTTTCA GTTCTAGAGA GCCGGTGTGT
  Y
  CCCTATATTC CTGCAAGCTT GCGGGTGGAT CAGCAGATGC AAAGACCTAG GTGGAGACTT
  GGGGAGGGGG TGGGGGGTAG GCAGGAGGGA CGCAGGTCGG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47857589	NES11971002	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	T	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33838653					SNP	T	C	C	C	T	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47857589	NES11971002	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:42740017 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1495	CpG island 1495	80 bp proximal
Gm34006	predicted gene, 34006	within coordinates
Gm66346	predicted gene, 66346	668 bp upstream
Rr368979	regulatory region 368979	1491 bp downstream
Rr430643	regulatory region 430643	922 bp distal
Rr430644	regulatory region 430644	within coordinates
Rr430645	regulatory region 430645	650 bp proximal
Scml4	Scm polycomb group protein like 4	within coordinates
Tssr97454	transcription start site region 97454	21 bp upstream
Tssr97455	transcription start site region 97455	200 bp downstream