rs33839089 SNP Detail

Summary

• ID
  rs33839089
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:15302012 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCCTAATG GGTCAACAGT
  CAAGGCCCTT CAAGGAGCTT TGCCAGTGAA TTATCAAAAG TTTAAAAATG GATGATTCAT
  TTACAGACTG ACTGGAAGGA TGGTTTGGCA GATAGAAGGG GGTGATGGCT GCAATTCTAA
  TCTCCCTAAA CACTGTAGTA GGAATTTAGT TGAATGCAGC GTTATTCCTT GTCTAGTGGA
  S
  CTAGTTCATT AAAATAATAA TCAAAAGTAA CAACAACAAC AACCCCTGTA CCTGACTGAT
  GCTGTCATAC AGTGCCAAAT CTAAGTAACC TCTAGAGGTA AAATAAGATT TGAGGAATAA
  TGAAACTGAG GAGTTGATGT GCATCTCTAA CACTATAAGC CTTTGAAGTT TAGACACTGC
  AACACTGACT ACACAAAACA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	PWD/PhJ	WSB/EiJ
ss47358086	NES11370321	PERLEGEN	MM_PANEL2	f	SNP	G	C	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	PWD/PhJ	WSB/EiJ
rs33839089					SNP	G	C	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47358086	NES11370321	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:15302012 () rs orientation: forward

Symbol	Name	Function Class
Gm61108	predicted gene, 61108	within coordinates
Rr766	regulatory region 766	1607 bp proximal
Rr2063	regulatory region 2063	within coordinates
Rr2235	regulatory region 2235	1546 bp distal