rs33839209 SNP Detail

Summary

• ID
  rs33839209
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:191311475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATTCCCGG TGTTCTGTTG
  CTTTGCAATT GAGCTGTATT CTAACCCTGT GTGGTGATAC TTGGAAATTT TTTTTAGTCC
  TGTTACAACC AAGCACCATT AAAAAATGAA TATATGAGAT GTATACATGT TAGAGATTCA
  ATTTTGAGCC ATGTTCATCT GAGGTAAAGA AAATATGCAG CCATTGTCTA AGACACCCTT
  Y
  CCTGGTAATG CTTTGTTAGT GGTGCTTTAG TGGATATTGG TTGCATCTGT GGTTACTTAG
  TGTCTCGAAT GTCTACCTGA GGAGTAGCCC TTAGGAGCCC CTTCTCATGA AGGTGGAGGC
  AAAAAGTTCC CTAGCTTGTC TTTCGAGAGC AGCTCCGAGT TACCAGATCC TGCCAGTAAG
  ACACATGCTT TGATTAGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss49545667	NES12900881	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33839209					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49545667	NES12900881	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191311475 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ints7	integrator complex subunit 7			Intron
				Noncoding-Transcript-Variant
Rr426190	regulatory region 426190			221 bp proximal