rs33839616 SNP Detail

Summary

• ID
  rs33839616
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:143203463 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCAAGGG CAGATTCAGC
  AGCAGCAGCA GCAGCAGCAG CAGCAGCCGC CGCCAAAGGA ACCAGCGACT CAGACTGGAC
  ACCAAGCTGC AGAAGAAGCC AAACATGGCC GAGTGCAAGC ACGCCGCTGC TGCTCAGCTG
  GGAGGAGCTG CTGTGGTGGC CACGCCTCTC CTCAGCGGAT TGGTTCCTGT ATGGTTGCCT
  W
  ATCTCGTGGG CGGGTCCAGC GCCACCACTC TTGCCTTCCC ACCACAATCA GTGCTCAGTA
  ATATCTAGTT TTCTATAAAT AACGTAATTT TAAATGCCTA TGACGTTATT AACAGAATCA
  TATTTGTTAT AAACAGCAAG TTAAAGTCGA ATTCTCTGCC TTCGTTTGTT TTTCATTACG
  GTATACTGCT CTTTATTATA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47358588	NES11521006	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A	T	T	T	A	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33839616					SNP	T	T	T	T	T	A	T	T	T	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47358588	NES11521006	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:143203463 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19986	CpG island 19986	15 bp distal
E230032D23Rik	RIKEN cDNA E230032D23 gene	within coordinates
Rr167026	regulatory region 167026	within coordinates
Tnfrsf22	tumor necrosis factor receptor superfamily, member 22	65 bp upstream
Tssr75968	transcription start site region 75968	121 bp upstream
Tssr75969	transcription start site region 75969	55 bp upstream