rs33839622 SNP Detail

Summary

• ID
  rs33839622
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:143203509 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTGCTGTGG TGGCCACGCC TCTCCTCAGC GGATTGGTTC
  CTGTATGGTT GCCTTATCTC GTGGGCGGGT CCAGCGCCAC CACTCTTGCC TTCCCACCAC
  M
  ATCAGTGCTC AGTAATATCT AGTTTTCTAT AAATAACGTA ATTTTAAATG CCTATGACGT
  TATTAACAGA ATCATATTTG TTATAAACAG CAAGTTAAAG                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47358594	NES11521009	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	C	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs33839622					SNP	A	A	A	A	A	A	A	A	A	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47358594	NES11521009	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:143203509 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19986	CpG island 19986	61 bp distal
E230032D23Rik	RIKEN cDNA E230032D23 gene	within coordinates
Rr167026	regulatory region 167026	within coordinates
Tnfrsf22	tumor necrosis factor receptor superfamily, member 22	111 bp upstream
Tssr75968	transcription start site region 75968	167 bp upstream
Tssr75969	transcription start site region 75969	101 bp upstream