rs33839768 SNP Detail

Summary

• ID
  rs33839768
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:42974194 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGTCAAGAC TACGAGAGAG
  TGTTTTACAG TTTAATGAGG AGTTCTTGAG CGAGACCAGG CTCCTTAGTA TTAAAAGATT
  TAAGAAATGG AAGAGCCAGA TTACATTCAG TTTGCTACTT GGTGGGCAGC CAGCCTACAG
  CTCACAAAAT GGATACAACT TCTTCTACAG AGAGGTGCAC ATCCATCCAT TTATGTGCAC
  R
  GAGCCACACG TATGTGCACA GACATACCTG TTTTGCACCC CAGTGTTTGT CTTTTTGTCA
  TATTTAAGCA CAGAGGCTCA GAATTTGAAG GATAGAGACT CTCTGGTCTG ATTAGCCACC
  TCACACTGCC ACTCCATGGA ACTACACAAA AACTGGAAAT CATTCTCCCT ACCCCAGGGG
  CTCTGCTACT GTGACAAACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47859049	NES11960813	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33839768					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47859049	NES11960813	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:42974194 () rs orientation: forward

Symbol	Name	Function Class
Rr219473	regulatory region 219473	1407 bp proximal
Rr227633	regulatory region 227633	1795 bp distal
Rr227634	regulatory region 227634	within coordinates
Sobp	sine oculis binding protein	within coordinates