rs33840198 SNP Detail

Summary

• ID
  rs33840198
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:191309816 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCAACAAGAC ACATTGTATC AGCCGGGAAC AGTAGTGTGA
  CACATTGCTA AAGGCTGAGT CCCACATATT ACTCTAATAA GTGTAGCTTT TCCTAATGTA
  K
  ATTATTATCA TCAGACCAAG TATTTGCCCC TCCAGTGATT GGAAGTTGTC CAGATGAAAA
  CAGGCAAGAT CCCCTTCCTG CAGAGAGAAA GGTTTAGTGA                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49545681	NES12900990	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33840198					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49545681	NES12900990	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191309816 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1224	CpG island 1224			1399 bp distal
Ints7	integrator complex subunit 7			Intron
				Noncoding-Transcript-Variant
Rr396727	regulatory region 396727			1905 bp downstream
Rr396728	regulatory region 396728			1525 bp downstream
Rr426187	regulatory region 426187			480 bp distal
Rr426188	regulatory region 426188			1694 bp distal
Rr426189	regulatory region 426189			1527 bp distal
Rr426190	regulatory region 426190			1880 bp proximal
Tssr10773	transcription start site region 10773			1912 bp downstream